# HMM for Sequence Analysis

### Definition of Hidden Markov Model

Markov Model

Markov Model to HMM

Generative Grammar

Regular Grammar to HMM

### Dynamic Programming Algorithms of Hidden Markov Model

Viterbi Algorithm

Forward Algorithm

Backward Algorithm

### Marginalized Probabilities and EM algorithm of Hidden Markov Model

Marginalized Probabilities and Counts

Baum-Welch Algorithm