Lecture

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Lecture Notes > Sequence Analysis > HMM for Sequence Analysis

HMM for Sequence Analysis

Definition of Hidden Markov Model

Markov Model
Markov Model to HMM
Generative Grammar
Regular Grammar to HMM

Dynamic Programming Algorithms of Hidden Markov Model

Viterbi Algorithm
Forward Algorithm
Backward Algorithm

Marginalized Probabilities and EM algorithm of Hidden Markov Model

Marginalized Probabilities and Counts
Baum-Welch Algorithm

Pair Hidden Markov Model for Sequence Alignment

Pair Hidden Markov Model